Visualization Examples

Explore our comprehensive collection of food microbiome visualizations, showcasing various analytical approaches and research findings from the Food Microbiome Project.

Diversity and Composition

Microbial diversity and composition across different groups.

Correlation & Differential Analysis

Mantel's test heatmap showing correlations between environmental factors and microbial species, and volcano plot displaying significantly enriched/depleted genera between groups.

Pathway Analysis & Phylogenetic Tree

Extended error-bar plot showing pathway differences between groups with relative abundance and statistical significance, and phylogenetic tree of ASVs with branches colored by families.

Functional Annotation

Functional annotations of assembled contigs across categories with protein overlaps, and KEGG classification of functional genes at multiple levels.

Phylogenetic Tree & Species Analysis

Phylogenetic tree of MAGs with prevalence histograms for different groups, and differential analysis heatmap with relative abundance bar charts.

CAZy Functional Gene Analysis

CAZy functional gene annotations within MAGs, illustrating the distribution of key carbohydrate-active genes across MAGs.

Metabolism Comparison Analysis

Comparison of metagenome and metatranscriptome metabolism results with species pathway contributions, and metabolite comparison heatmap between groups.

VIP Score & Correlation Network

Variable influence on projection (VIP) scores showing metabolite importance by category, and Spearman correlation network of species and metabolites with correlation strength.

Protein Interaction & Viral Phylogenetic Analysis

Protein-protein interaction network with clusters, and phylogenetic tree of viral OTUs with host discrimination, family classification, and group prevalence.

Diversity

Correlation

Pathway

Functional

Phylogenetic

CAZy

Metabolism

Network

Protein